PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000127596
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YB
Protein Properties Length: 208aa    MW: 23010.4 Da    PI: 7.6642
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000127596genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.81.2e-5626121297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl+kyre+eg+k
  MDP0000127596  26 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNKYRETEGDK 121
                    89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.7E-5522140IPR009072Histone-fold
SuperFamilySSF471131.15E-4128140IPR009072Histone-fold
PfamPF008081.7E-273195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.3E-205977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.3E-207896No hitNo description
PRINTSPR006157.3E-2097115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSGKRNQTCS PVGSPLSGNV SDSGSKEQDR FLPIANVSRI MKKSLPANAK ISKEAKETVQ  60
ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMTTLGF ENYVGPLKLY LNKYRETEGD  120
KNSMAREEDH PHGSNDQTNT ISSNKMDFSN GGFYSVGGRQ QQQQVMTSNY NMASSHGAYN  180
FSRIHESGDG SANRDLAAHH HIHNGIGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4826116292Transcription factor HapC (Eurofung)
4g92_B2e-4826116292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362436.11e-157PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_008368639.11e-157PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotO233109e-63NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLM5W0471e-105M5W047_PRUPE; Uncharacterized protein
STRINGGLYMA05G31681.18e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-64nuclear factor Y, subunit B3